Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMN21036529
[wgsExptID] => 0
[Batch] => Downloaded
[SeqLaboratory] => Various
[Platform] => Various
[InstrumentModel] => Various
[ReadType] =>
[LibraryPrep] =>
[PcrFree] =>
[SampleCount] =>
[DateSubmitted] =>
[FastqID] => 882
[wgsID] => 453
[fwdFile] =>
[fwdMd5] =>
[revFile] =>
[revMd5] =>
[rawReads] => 1163426802
[FastqRCS] => 1
[enaExperiment] =>
[enaRun] =>
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1659
[wgsID] => 453
[refGenome] => cf4
[dateSubmitted] => 2024-06-11 09:44:03
[dateCompleted] => 2024-06-11 22:39:03
[bamMd5] => 2a105d6829948b8770583a0dd6be036b
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 391094481
[primaryReads] => 387308024
[mappedReads] => 390627802
[primaryMapped] => 386841345
[pairedReads] => 371821214
[meanInsertSize] => 385.76
[meanReadDepth] => 19.18
[variantsCalled] => 6582930
[variantsFiltered] => 6260721
[snpCount] => 4449488
[snpHom] => 1443470
[snpHet] => 3006018
[indelCount] => 1821468
[insHom] => 242697
[delHom] => 350014
[insHet] => 567848
[delHet] => 700273
[genomicsDB] => cf4-toy
[varsity] => 0
[enaAnalysis] =>
[enaBam] =>
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
|---|
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242
