Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190089
[wgsExptID] => 18
[Batch] => Edinburgh_8
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 17
[DateSubmitted] => 2017-12-12
[FastqID] => 103
[wgsID] => 294
[fwdFile] => AS_20361_R1.fastq.gz
[fwdMd5] => 6081fb48f39d96ca90053dd809e8bd18
[revFile] => AS_20361_R2.fastq.gz
[revMd5] => 434ae19e53cd064d32800e8dbdf1e2c5
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10664691
[enaRun] => ERR11256482
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 420
[wgsID] => 294
[refGenome] => cf4
[dateSubmitted] => 2023-02-03 12:09:00
[dateCompleted] => 2023-02-04 06:06:00
[bamMd5] => e79597363aa2c73615e375fc390c3630
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 929873388
[primaryReads] =>
[mappedReads] => 926952122
[primaryMapped] =>
[pairedReads] => 907231534
[meanInsertSize] => 478.70
[meanReadDepth] => 48.73
[variantsCalled] => 6603729
[variantsFiltered] => 6233032
[snpCount] => 4352171
[snpHom] => 1706437
[snpHet] => 2645734
[indelCount] => 1893472
[insHom] => 268057
[delHom] => 375238
[insHet] => 588771
[delHet] => 710489
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] => ERZ21778094
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21778094/AS_20361-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242