Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190089
                    [wgsExptID] => 18
                    [Batch] => Edinburgh_8
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 17
                    [DateSubmitted] => 2017-12-12
                    [FastqID] => 103
                    [wgsID] => 294
                    [fwdFile] => AS_20361_R1.fastq.gz
                    [fwdMd5] => 6081fb48f39d96ca90053dd809e8bd18
                    [revFile] => AS_20361_R2.fastq.gz
                    [revMd5] => 434ae19e53cd064d32800e8dbdf1e2c5
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10664691
                    [enaRun] => ERR11256482
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 420
                    [wgsID] => 294
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-02-03 12:09:00
                    [dateCompleted] => 2023-02-04 06:06:00
                    [bamMd5] => e79597363aa2c73615e375fc390c3630
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 929873388
                    [primaryReads] => 
                    [mappedReads] => 926952122
                    [primaryMapped] => 
                    [pairedReads] => 907231534
                    [meanInsertSize] => 478.70
                    [meanReadDepth] => 48.73
                    [variantsCalled] => 6603729
                    [variantsFiltered] => 6233032
                    [snpCount] => 4352171
                    [snpHom] => 1706437
                    [snpHet] => 2645734
                    [indelCount] => 1893472
                    [insHom] => 268057
                    [delHom] => 375238
                    [insHet] => 588771
                    [delHet] => 710489
                    [genomicsDB] => cf4-pastoral
                    [varsity] => 0
                    [enaAnalysis] => ERZ21778094
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21778094/AS_20361-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242