Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMN21036530
[wgsExptID] => 0
[Batch] => Downloaded
[SeqLaboratory] => Various
[Platform] => Various
[InstrumentModel] => Various
[ReadType] =>
[LibraryPrep] =>
[PcrFree] =>
[SampleCount] =>
[DateSubmitted] =>
[FastqID] => 883
[wgsID] => 454
[fwdFile] =>
[fwdMd5] =>
[revFile] =>
[revMd5] =>
[rawReads] => 1051843482
[FastqRCS] => 1
[enaExperiment] =>
[enaRun] =>
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1660
[wgsID] => 454
[refGenome] => cf4
[dateSubmitted] => 2024-06-11 09:44:43
[dateCompleted] => 2024-06-11 21:48:51
[bamMd5] => 1d14586d6d265dac92846670c7f3b278
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 353604320
[primaryReads] => 350167100
[mappedReads] => 353163537
[primaryMapped] => 349726317
[pairedReads] => 334955776
[meanInsertSize] => 395.37
[meanReadDepth] => 17.62
[variantsCalled] => 6278088
[variantsFiltered] => 6014111
[snpCount] => 4274639
[snpHom] => 1761516
[snpHet] => 2513123
[indelCount] => 1748342
[insHom] => 303343
[delHom] => 423241
[insHet] => 474256
[delHet] => 581732
[genomicsDB] => cf4-toy
[varsity] => 0
[enaAnalysis] =>
[enaBam] =>
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
|---|
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242
