Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMN21036531
[wgsExptID] => 0
[Batch] => Downloaded
[SeqLaboratory] => Various
[Platform] => Various
[InstrumentModel] => Various
[ReadType] =>
[LibraryPrep] =>
[PcrFree] =>
[SampleCount] =>
[DateSubmitted] =>
[FastqID] => 884
[wgsID] => 455
[fwdFile] =>
[fwdMd5] =>
[revFile] =>
[revMd5] =>
[rawReads] => 939052074
[FastqRCS] => 1
[enaExperiment] =>
[enaRun] =>
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1661
[wgsID] => 455
[refGenome] => cf4
[dateSubmitted] => 2024-06-11 09:45:17
[dateCompleted] => 2024-06-11 20:29:40
[bamMd5] => 678ca7eacdb1e1e5396b580c0408c6a5
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 316059764
[primaryReads] => 312722680
[mappedReads] => 315773952
[primaryMapped] => 312436868
[pairedReads] => 299124126
[meanInsertSize] => 385.01
[meanReadDepth] => 15.58
[variantsCalled] => 6305089
[variantsFiltered] => 6029973
[snpCount] => 4290479
[snpHom] => 1581838
[snpHet] => 2708641
[indelCount] => 1748732
[insHom] => 266288
[delHom] => 380032
[insHet] => 508909
[delHet] => 628012
[genomicsDB] => cf4-toy
[varsity] => 0
[enaAnalysis] =>
[enaBam] =>
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
|---|
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242
