Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMN21036533
[wgsExptID] => 0
[Batch] => Downloaded
[SeqLaboratory] => Various
[Platform] => Various
[InstrumentModel] => Various
[ReadType] =>
[LibraryPrep] =>
[PcrFree] =>
[SampleCount] =>
[DateSubmitted] =>
[FastqID] => 886
[wgsID] => 457
[fwdFile] =>
[fwdMd5] =>
[revFile] =>
[revMd5] =>
[rawReads] => 965096880
[FastqRCS] => 1
[enaExperiment] =>
[enaRun] =>
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1663
[wgsID] => 457
[refGenome] => cf4
[dateSubmitted] => 2024-06-11 09:46:58
[dateCompleted] => 2024-06-11 22:53:45
[bamMd5] => 049d87405724125f4543604bff4a3cd5
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 324032696
[primaryReads] => 321201928
[mappedReads] => 323348880
[primaryMapped] => 320518112
[pairedReads] => 307919568
[meanInsertSize] => 398.97
[meanReadDepth] => 15.75
[variantsCalled] => 6263239
[variantsFiltered] => 5994767
[snpCount] => 4268210
[snpHom] => 1686368
[snpHet] => 2581842
[indelCount] => 1735600
[insHom] => 286506
[delHom] => 404199
[insHet] => 485159
[delHet] => 593900
[genomicsDB] => cf4-toy
[varsity] => 0
[enaAnalysis] =>
[enaBam] =>
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
|---|
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242
