Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190184
                    [wgsExptID] => 17
                    [Batch] => Edinburgh_7
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 19
                    [DateSubmitted] => 
                    [FastqID] => 151
                    [wgsID] => 277
                    [fwdFile] => C_33833_R1.fastq.gz
                    [fwdMd5] => e997293c60d0c41e5d66634e1ce44327
                    [revFile] => C_33833_R2.fastq.gz
                    [revMd5] => b9a695c99166e8c271283d22680ef117
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10665927
                    [enaRun] => ERR11257718
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 415
                    [wgsID] => 277
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-04-05 15:17:00
                    [dateCompleted] => 2023-04-06 08:09:00
                    [bamMd5] => 6b760ac06e68bfe5edd7474adfab770d
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 819234922
                    [primaryReads] => 
                    [mappedReads] => 817013630
                    [primaryMapped] => 
                    [pairedReads] => 802270716
                    [meanInsertSize] => 500.25
                    [meanReadDepth] => 45.15
                    [variantsCalled] => 6400300
                    [variantsFiltered] => 6024958
                    [snpCount] => 4212356
                    [snpHom] => 1891220
                    [snpHet] => 2321136
                    [indelCount] => 1823434
                    [insHom] => 304584
                    [delHom] => 421530
                    [insHet] => 515697
                    [delHet] => 621928
                    [genomicsDB] => cf4-pastoral
                    [varsity] => 0
                    [enaAnalysis] => ERZ21780958
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21780958/PWC_33833-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242