Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190178
                    [wgsExptID] => 17
                    [Batch] => Edinburgh_7
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 19
                    [DateSubmitted] => 
                    [FastqID] => 104
                    [wgsID] => 271
                    [fwdFile] => AT_33568_R1.fastq.gz
                    [fwdMd5] => d95355f8b4a72000307ef2597603ef42
                    [revFile] => AT_33568_R2.fastq.gz
                    [revMd5] => 9491d99ce29961699a530f43fe54cba3
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10665922
                    [enaRun] => ERR11257713
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 263
                    [wgsID] => 271
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-11-08 15:48:00
                    [dateCompleted] => 2022-11-09 07:59:00
                    [bamMd5] => 514d49e7c174ac5ab8c079a2d8c33c2f
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 873752899
                    [primaryReads] => 
                    [mappedReads] => 858831300
                    [primaryMapped] => 
                    [pairedReads] => 841926516
                    [meanInsertSize] => 459.00
                    [meanReadDepth] => 43.50
                    [variantsCalled] => 6157952
                    [variantsFiltered] => 5778159
                    [snpCount] => 4030707
                    [snpHom] => 2113921
                    [snpHet] => 1916786
                    [indelCount] => 1757128
                    [insHom] => 344882
                    [delHom] => 473520
                    [insHet] => 440174
                    [delHet] => 531291
                    [genomicsDB] => cf4-terrier
                    [varsity] => 0
                    [enaAnalysis] => ERZ21780952
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21780952/AT_33568-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242