Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190118
                    [wgsExptID] => 19
                    [Batch] => Edinburgh_9
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 17
                    [DateSubmitted] => 2018-04-26
                    [FastqID] => 246
                    [wgsID] => 73
                    [fwdFile] => RW_34409_R1.fastq.gz
                    [fwdMd5] => fc0dcadb2a142321316c6cab30606ae6
                    [revFile] => RW_34409_R2.fastq.gz
                    [revMd5] => 582bd127b8c596b659c4276dafd31920
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10648185
                    [enaRun] => ERR11223856
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 70
                    [wgsID] => 73
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-10-11 12:25:00
                    [dateCompleted] => 2022-10-12 05:40:00
                    [bamMd5] => 5d90c6e1a7577552437695b0c50e6b0f
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 996831675
                    [primaryReads] => 
                    [mappedReads] => 977463761
                    [primaryMapped] => 
                    [pairedReads] => 953138624
                    [meanInsertSize] => 405.29
                    [meanReadDepth] => 42.52
                    [variantsCalled] => 6307805
                    [variantsFiltered] => 5927866
                    [snpCount] => 4116664
                    [snpHom] => 1974212
                    [snpHet] => 2142452
                    [indelCount] => 1822178
                    [insHom] => 306442
                    [delHom] => 429349
                    [insHet] => 508092
                    [delHet] => 617956
                    [genomicsDB] => cf4-working
                    [varsity] => 0
                    [enaAnalysis] => ERZ21775564
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21775564/RW_34409-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242