Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721095
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 585
[wgsID] => 347
[fwdFile] => SBT_37493_R1.fastq.gz
[fwdMd5] => 1f0c4d389732b055c5f2b0f397eaa9d5
[revFile] => SBT_37493_R2.fastq.gz
[revMd5] => b5b50f4b3a2e02158b02fbbde891bb43
[rawReads] => 817223350
[FastqRCS] => 1
[enaExperiment] => ERX10632424
[enaRun] => ERR11203040
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 804
[wgsID] => 347
[refGenome] => cf4
[dateSubmitted] => 2023-06-15 10:58:00
[dateCompleted] => 2023-06-16 04:03:00
[bamMd5] => 30b054075e51a73434d187799da01c97
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 815183116
[primaryReads] =>
[mappedReads] => 814421774
[primaryMapped] =>
[pairedReads] => 793946524
[meanInsertSize] => 372.50
[meanReadDepth] => 38.24
[variantsCalled] => 5934734
[variantsFiltered] => 5554240
[snpCount] => 3864263
[snpHom] => 2146328
[snpHet] => 1717935
[indelCount] => 1698295
[insHom] => 356297
[delHom] => 491126
[insHet] => 399886
[delHet] => 479898
[genomicsDB] => cf4-terrier
[varsity] => 0
[enaAnalysis] => ERZ21817151
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817151/SBT_37493-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242