Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112721095
                    [wgsExptID] => 26
                    [Batch] => CRUKCI_4
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => 
                    [PcrFree] => N
                    [SampleCount] => 60
                    [DateSubmitted] => 2023-02-23
                    [FastqID] => 585
                    [wgsID] => 347
                    [fwdFile] => SBT_37493_R1.fastq.gz
                    [fwdMd5] => 1f0c4d389732b055c5f2b0f397eaa9d5
                    [revFile] => SBT_37493_R2.fastq.gz
                    [revMd5] => b5b50f4b3a2e02158b02fbbde891bb43
                    [rawReads] => 817223350
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10632424
                    [enaRun] => ERR11203040
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 804
                    [wgsID] => 347
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-06-15 10:58:00
                    [dateCompleted] => 2023-06-16 04:03:00
                    [bamMd5] => 30b054075e51a73434d187799da01c97
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 815183116
                    [primaryReads] => 
                    [mappedReads] => 814421774
                    [primaryMapped] => 
                    [pairedReads] => 793946524
                    [meanInsertSize] => 372.50
                    [meanReadDepth] => 38.24
                    [variantsCalled] => 5934734
                    [variantsFiltered] => 5554240
                    [snpCount] => 3864263
                    [snpHom] => 2146328
                    [snpHet] => 1717935
                    [indelCount] => 1698295
                    [insHom] => 356297
                    [delHom] => 491126
                    [insHet] => 399886
                    [delHet] => 479898
                    [genomicsDB] => cf4-terrier
                    [varsity] => 0
                    [enaAnalysis] => ERZ21817151
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817151/SBT_37493-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242