Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190179
                    [wgsExptID] => 17
                    [Batch] => Edinburgh_7
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 19
                    [DateSubmitted] => 
                    [FastqID] => 105
                    [wgsID] => 274
                    [fwdFile] => AT_33732_R1.fastq.gz
                    [fwdMd5] => bb0fb9720ce8072bcf3fdc246d397b91
                    [revFile] => AT_33732_R2.fastq.gz
                    [revMd5] => 7e3732d213f472587807e30c707aff77
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10665924
                    [enaRun] => ERR11257715
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 264
                    [wgsID] => 274
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-11-07 11:39:00
                    [dateCompleted] => 2023-03-30 09:42:00
                    [bamMd5] => 94ab77ec6969d8a7531a5209a1a88a2b
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 942049479
                    [primaryReads] => 
                    [mappedReads] => 803943274
                    [primaryMapped] => 
                    [pairedReads] => 786702818
                    [meanInsertSize] => 444.91
                    [meanReadDepth] => 39.22
                    [variantsCalled] => 6311612
                    [variantsFiltered] => 5927627
                    [snpCount] => 4143226
                    [snpHom] => 1945786
                    [snpHet] => 2197440
                    [indelCount] => 1795022
                    [insHom] => 315123
                    [delHom] => 437093
                    [insHet] => 489160
                    [delHet] => 591177
                    [genomicsDB] => cf4-terrier
                    [varsity] => 0
                    [enaAnalysis] => ERZ21780953
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21780953/AT_33732-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242