Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190179
[wgsExptID] => 17
[Batch] => Edinburgh_7
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 19
[DateSubmitted] =>
[FastqID] => 105
[wgsID] => 274
[fwdFile] => AT_33732_R1.fastq.gz
[fwdMd5] => bb0fb9720ce8072bcf3fdc246d397b91
[revFile] => AT_33732_R2.fastq.gz
[revMd5] => 7e3732d213f472587807e30c707aff77
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10665924
[enaRun] => ERR11257715
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 264
[wgsID] => 274
[refGenome] => cf4
[dateSubmitted] => 2022-11-07 11:39:00
[dateCompleted] => 2023-03-30 09:42:00
[bamMd5] => 94ab77ec6969d8a7531a5209a1a88a2b
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 942049479
[primaryReads] =>
[mappedReads] => 803943274
[primaryMapped] =>
[pairedReads] => 786702818
[meanInsertSize] => 444.91
[meanReadDepth] => 39.22
[variantsCalled] => 6311612
[variantsFiltered] => 5927627
[snpCount] => 4143226
[snpHom] => 1945786
[snpHet] => 2197440
[indelCount] => 1795022
[insHom] => 315123
[delHom] => 437093
[insHet] => 489160
[delHet] => 591177
[genomicsDB] => cf4-terrier
[varsity] => 0
[enaAnalysis] => ERZ21780953
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21780953/AT_33732-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242