Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112721103
                    [wgsExptID] => 26
                    [Batch] => CRUKCI_4
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => 
                    [PcrFree] => N
                    [SampleCount] => 60
                    [DateSubmitted] => 2023-02-23
                    [FastqID] => 599
                    [wgsID] => 355
                    [fwdFile] => SBT_38262_R1.fastq.gz
                    [fwdMd5] => d0a60a42821ab147660f8cbab9313c76
                    [revFile] => SBT_38262_R2.fastq.gz
                    [revMd5] => 7a89ad4626416bc40d4e355fef8a14d9
                    [rawReads] => 843513640
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10632438
                    [enaRun] => ERR11203054
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 818
                    [wgsID] => 355
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-06-16 10:44:00
                    [dateCompleted] => 2023-06-17 02:33:00
                    [bamMd5] => c5702d83c2af699e62b30b1638ba07cb
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 837565574
                    [primaryReads] => 
                    [mappedReads] => 836622173
                    [primaryMapped] => 
                    [pairedReads] => 813325464
                    [meanInsertSize] => 385.23
                    [meanReadDepth] => 40.52
                    [variantsCalled] => 5922465
                    [variantsFiltered] => 5524658
                    [snpCount] => 3846443
                    [snpHom] => 2210789
                    [snpHet] => 1635654
                    [indelCount] => 1686251
                    [insHom] => 372924
                    [delHom] => 510289
                    [insHet] => 377560
                    [delHet] => 452759
                    [genomicsDB] => cf4-terrier
                    [varsity] => 0
                    [enaAnalysis] => ERZ21817154
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817154/SBT_38262-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242