Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721105
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 601
[wgsID] => 357
[fwdFile] => SBT_38264_R1.fastq.gz
[fwdMd5] => f976814a6f7cf1db3764c916ec18a4ca
[revFile] => SBT_38264_R2.fastq.gz
[revMd5] => e6705ce480355e2770ab19491ed72f60
[rawReads] => 819888546
[FastqRCS] => 1
[enaExperiment] => ERX10632440
[enaRun] => ERR11203056
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 820
[wgsID] => 357
[refGenome] => cf4
[dateSubmitted] => 2023-06-15 11:03:00
[dateCompleted] => 2023-06-16 03:04:00
[bamMd5] => 6026cb51a0e5987928f2ce5c2c89ceb6
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 788390396
[primaryReads] =>
[mappedReads] => 787518489
[primaryMapped] =>
[pairedReads] => 755391972
[meanInsertSize] => 370.21
[meanReadDepth] => 36.63
[variantsCalled] => 6146122
[variantsFiltered] => 5771122
[snpCount] => 4027571
[snpHom] => 2021883
[snpHet] => 2005688
[indelCount] => 1752870
[insHom] => 331954
[delHom] => 460371
[insHet] => 449233
[delHet] => 544757
[genomicsDB] => cf4-terrier
[varsity] => 0
[enaAnalysis] => ERZ21817156
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817156/SBT_38264-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242