Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112721105
                    [wgsExptID] => 26
                    [Batch] => CRUKCI_4
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => 
                    [PcrFree] => N
                    [SampleCount] => 60
                    [DateSubmitted] => 2023-02-23
                    [FastqID] => 601
                    [wgsID] => 357
                    [fwdFile] => SBT_38264_R1.fastq.gz
                    [fwdMd5] => f976814a6f7cf1db3764c916ec18a4ca
                    [revFile] => SBT_38264_R2.fastq.gz
                    [revMd5] => e6705ce480355e2770ab19491ed72f60
                    [rawReads] => 819888546
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10632440
                    [enaRun] => ERR11203056
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 820
                    [wgsID] => 357
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-06-15 11:03:00
                    [dateCompleted] => 2023-06-16 03:04:00
                    [bamMd5] => 6026cb51a0e5987928f2ce5c2c89ceb6
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 788390396
                    [primaryReads] => 
                    [mappedReads] => 787518489
                    [primaryMapped] => 
                    [pairedReads] => 755391972
                    [meanInsertSize] => 370.21
                    [meanReadDepth] => 36.63
                    [variantsCalled] => 6146122
                    [variantsFiltered] => 5771122
                    [snpCount] => 4027571
                    [snpHom] => 2021883
                    [snpHet] => 2005688
                    [indelCount] => 1752870
                    [insHom] => 331954
                    [delHom] => 460371
                    [insHet] => 449233
                    [delHet] => 544757
                    [genomicsDB] => cf4-terrier
                    [varsity] => 0
                    [enaAnalysis] => ERZ21817156
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817156/SBT_38264-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242