Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112365210
                    [wgsExptID] => 25
                    [Batch] => CRUKCI_3
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => In house, Illumina® DNA PCR-Free Prep, Tagmentation
                    [PcrFree] => Y
                    [SampleCount] => 17
                    [DateSubmitted] => 2022-11-17
                    [FastqID] => 503
                    [wgsID] => 330
                    [fwdFile] => SBT_39514_R1.fastq.gz
                    [fwdMd5] => 11e8da4f469383e68ece9118b7024cd8
                    [revFile] => SBT_39514_R2.fastq.gz
                    [revMd5] => ba0a1624d2d1a9af897c73f988ed563e
                    [rawReads] => 585213920
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10255920
                    [enaRun] => ERR10807453
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 504
                    [wgsID] => 330
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-06-22 10:01:00
                    [dateCompleted] => 2023-06-23 02:20:00
                    [bamMd5] => 42e04f93f33da091aee4d0c43fcf9243
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 492884380
                    [primaryReads] => 
                    [mappedReads] => 490510477
                    [primaryMapped] => 
                    [pairedReads] => 475056286
                    [meanInsertSize] => 424.39
                    [meanReadDepth] => 21.84
                    [variantsCalled] => 6170090
                    [variantsFiltered] => 5858254
                    [snpCount] => 4109944
                    [snpHom] => 1932326
                    [snpHet] => 2177618
                    [indelCount] => 1757286
                    [insHom] => 354156
                    [delHom] => 478823
                    [insHet] => 436319
                    [delHet] => 524876
                    [genomicsDB] => cf4-terrier
                    [varsity] => 0
                    [enaAnalysis] => ERZ21617052
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21617052/SBT_39514-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242