Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112721109
                    [wgsExptID] => 26
                    [Batch] => CRUKCI_4
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => 
                    [PcrFree] => N
                    [SampleCount] => 60
                    [DateSubmitted] => 2023-02-23
                    [FastqID] => 608
                    [wgsID] => 361
                    [fwdFile] => SBT_39561_R1.fastq.gz
                    [fwdMd5] => 58ee66ed72153371efc80b6f097777a0
                    [revFile] => SBT_39561_R2.fastq.gz
                    [revMd5] => 6de91dc45903559e7de6893836d058de
                    [rawReads] => 779861570
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10632447
                    [enaRun] => ERR11203063
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 827
                    [wgsID] => 361
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-06-15 11:04:00
                    [dateCompleted] => 2023-06-16 02:31:00
                    [bamMd5] => c53221e5e2c920b4df3fd63bbc0e34c8
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 759312939
                    [primaryReads] => 
                    [mappedReads] => 757005749
                    [primaryMapped] => 
                    [pairedReads] => 729297312
                    [meanInsertSize] => 375.08
                    [meanReadDepth] => 36.75
                    [variantsCalled] => 6306946
                    [variantsFiltered] => 5895614
                    [snpCount] => 4129963
                    [snpHom] => 1975395
                    [snpHet] => 2154568
                    [indelCount] => 1775319
                    [insHom] => 327866
                    [delHom] => 455587
                    [insHet] => 464596
                    [delHet] => 561908
                    [genomicsDB] => cf4-terrier
                    [varsity] => 0
                    [enaAnalysis] => ERZ21817157
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817157/SBT_39561-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242