Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7189979
[wgsExptID] => 10
[Batch] => Oxford_7
[SeqLaboratory] => Wellcome Trust Centre for Human Genetics
[Platform] => Illumina
[InstrumentModel] => HiSeq4000
[ReadType] => 100bp:PAIRED:15X
[LibraryPrep] => WTCHG, PCR FREE
[PcrFree] => Y
[SampleCount] => 3
[DateSubmitted] =>
[FastqID] => 475
[wgsID] => 123
[fwdFile] => SCT_29475_R1.fastq.gz
[fwdMd5] => 5d50ee8503095234af98501b1e2dd945
[revFile] => SCT_29475_R2.fastq.gz
[revMd5] => 117a49d0f799b6f23750c288ae61d1eb
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10810953
[enaRun] => ERR11403162
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 234
[wgsID] => 123
[refGenome] => cf4
[dateSubmitted] => 2022-11-20 11:12:00
[dateCompleted] => 2022-11-21 02:35:00
[bamMd5] => 672177ef1147138ae0d87399f982777c
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 405355185
[primaryReads] =>
[mappedReads] => 404023763
[primaryMapped] =>
[pairedReads] => 393420594
[meanInsertSize] => 272.88
[meanReadDepth] => 19.71
[variantsCalled] => 5626995
[variantsFiltered] => 5390035
[snpCount] => 3857082
[snpHom] =>
[snpHet] =>
[indelCount] => 1539318
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-terrier
[varsity] => 0
[enaAnalysis] => ERZ21789634
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21789634/SCT_29475-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242