Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] =>
[wgsExptID] => 0
[Batch] => Downloaded
[SeqLaboratory] => Various
[Platform] => Various
[InstrumentModel] => Various
[ReadType] =>
[LibraryPrep] =>
[PcrFree] =>
[SampleCount] =>
[DateSubmitted] =>
[FastqID] => 728
[wgsID] => 333
[fwdFile] =>
[fwdMd5] =>
[revFile] =>
[revMd5] =>
[rawReads] =>
[FastqRCS] => 0
[enaExperiment] =>
[enaRun] =>
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 367
[wgsID] => 333
[refGenome] => cf4
[dateSubmitted] => 2022-11-24 11:47:00
[dateCompleted] => 2022-11-29 19:55:00
[bamMd5] => 6968239f8e481a510ef609e180dc8283
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 404696592
[primaryReads] =>
[mappedReads] => 400976785
[primaryMapped] =>
[pairedReads] => 385599680
[meanInsertSize] => 535.34
[meanReadDepth] => 20.61
[variantsCalled] => 5409049
[variantsFiltered] => 5175338
[snpCount] => 3773649
[snpHom] =>
[snpHet] =>
[indelCount] => 1405958
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-terrier
[varsity] => 0
[enaAnalysis] =>
[enaBam] =>
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
|---|
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242
