Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190119
                    [wgsExptID] => 19
                    [Batch] => Edinburgh_9
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 17
                    [DateSubmitted] => 2018-04-26
                    [FastqID] => 248
                    [wgsID] => 72
                    [fwdFile] => SCWT_34784_R1.fastq.gz
                    [fwdMd5] => bfc3b24d15f4782fbef3acee240ca30f
                    [revFile] => SCWT_34784_R2.fastq.gz
                    [revMd5] => bb35b6c80fe86ef3d60fcd34ce38b8e1
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10648190
                    [enaRun] => ERR11223861
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 71
                    [wgsID] => 72
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-10-11 12:26:00
                    [dateCompleted] => 2022-10-12 06:10:00
                    [bamMd5] => a41eace8dd7376f7f6c46a0bd9dc832a
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 1004274693
                    [primaryReads] => 
                    [mappedReads] => 965705538
                    [primaryMapped] => 
                    [pairedReads] => 944053082
                    [meanInsertSize] => 456.65
                    [meanReadDepth] => 43.24
                    [variantsCalled] => 6435442
                    [variantsFiltered] => 6064905
                    [snpCount] => 4224210
                    [snpHom] => 1919801
                    [snpHet] => 2304409
                    [indelCount] => 1852127
                    [insHom] => 302163
                    [delHom] => 420236
                    [insHet] => 526988
                    [delHet] => 643472
                    [genomicsDB] => cf4-terrier
                    [varsity] => 0
                    [enaAnalysis] => ERZ21775565
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21775565/SCWT_34784-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242