Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721102
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 596
[wgsID] => 354
[fwdFile] => SCWT_37962_R1.fastq.gz
[fwdMd5] => 0b8d18c3b9c33d085c38b8123aa8bda2
[revFile] => SCWT_37962_R2.fastq.gz
[revMd5] => c338726e4b2da4a83309f549501ee0f6
[rawReads] => 842546436
[FastqRCS] => 1
[enaExperiment] => ERX10632435
[enaRun] => ERR11203051
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 815
[wgsID] => 354
[refGenome] => cf4
[dateSubmitted] => 2023-06-16 10:28:00
[dateCompleted] => 2023-06-17 00:12:00
[bamMd5] => 999252e6ce22a3d52417df9b0f58054b
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 639318471
[primaryReads] =>
[mappedReads] => 638094421
[primaryMapped] =>
[pairedReads] => 617179236
[meanInsertSize] => 381.66
[meanReadDepth] => 32.32
[variantsCalled] => 5828009
[variantsFiltered] => 5496349
[snpCount] => 3838887
[snpHom] => 2244400
[snpHet] => 1594487
[indelCount] => 1664683
[insHom] => 378964
[delHom] => 520115
[insHet] => 357092
[delHet] => 433006
[genomicsDB] => cf4-terrier
[varsity] => 0
[enaAnalysis] => ERZ21817159
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817159/SCWT_37962-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242