Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190120
                    [wgsExptID] => 19
                    [Batch] => Edinburgh_9
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 17
                    [DateSubmitted] => 2018-04-26
                    [FastqID] => 249
                    [wgsID] => 71
                    [fwdFile] => SCWT_7230_R1.fastq.gz
                    [fwdMd5] => 2396c29c2352603c3a63e78b5b565d98
                    [revFile] => SCWT_7230_R2.fastq.gz
                    [revMd5] => 59969ee5f4f8b74850225dfd2122edeb
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10648176
                    [enaRun] => ERR11223847
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 72
                    [wgsID] => 71
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-10-12 13:09:00
                    [dateCompleted] => 2022-10-13 06:12:00
                    [bamMd5] => d17182d1c647708ed2e984141f2a7705
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 992739464
                    [primaryReads] => 
                    [mappedReads] => 988922692
                    [primaryMapped] => 
                    [pairedReads] => 968515200
                    [meanInsertSize] => 476.93
                    [meanReadDepth] => 44.56
                    [variantsCalled] => 6368907
                    [variantsFiltered] => 5952288
                    [snpCount] => 4140788
                    [snpHom] => 1948839
                    [snpHet] => 2191949
                    [indelCount] => 1822418
                    [insHom] => 305569
                    [delHom] => 424501
                    [insHet] => 509462
                    [delHet] => 622509
                    [genomicsDB] => cf4-terrier
                    [varsity] => 0
                    [enaAnalysis] => ERZ21775566
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21775566/SCWT_7230-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242