Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190194
                    [wgsExptID] => 17
                    [Batch] => Edinburgh_7
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 19
                    [DateSubmitted] => 
                    [FastqID] => 247
                    [wgsID] => 276
                    [fwdFile] => SC_33832_R1.fastq.gz
                    [fwdMd5] => 739a2f0e132dd14061956d22faa5dccd
                    [revFile] => SC_33832_R2.fastq.gz
                    [revMd5] => 139f13965340e84ffaa41e96e70d9ab6
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10665926
                    [enaRun] => ERR11257717
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 414
                    [wgsID] => 276
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-03-30 09:41:00
                    [dateCompleted] => 2023-03-31 04:53:00
                    [bamMd5] => e1f7ca8c6821e04e581c63db0330fbed
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 938622756
                    [primaryReads] => 
                    [mappedReads] => 936131786
                    [primaryMapped] => 
                    [pairedReads] => 916812176
                    [meanInsertSize] => 473.04
                    [meanReadDepth] => 47.16
                    [variantsCalled] => 6002515
                    [variantsFiltered] => 5602553
                    [snpCount] => 3900611
                    [snpHom] => 2189935
                    [snpHet] => 1710676
                    [indelCount] => 1710796
                    [insHom] => 358638
                    [delHom] => 489628
                    [insHet] => 405005
                    [delHet] => 486920
                    [genomicsDB] => cf4-pastoral
                    [varsity] => 0
                    [enaAnalysis] => ERZ21780969
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21780969/SC_33832-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242