Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721113
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 615
[wgsID] => 365
[fwdFile] => SHD_39749_R1.fastq.gz
[fwdMd5] => e8459a3a8fcde14868127fdddf32e19a
[revFile] => SHD_39749_R2.fastq.gz
[revMd5] => 62b2506322b96bc8db7c3fb107a84119
[rawReads] => 885985480
[FastqRCS] => 1
[enaExperiment] => ERX10632454
[enaRun] => ERR11203070
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 834
[wgsID] => 365
[refGenome] => cf4
[dateSubmitted] => 2023-06-16 10:44:00
[dateCompleted] => 2023-06-17 02:46:00
[bamMd5] => db0378687540f93f6a96db4fa5ef4443
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 726887423
[primaryReads] =>
[mappedReads] => 725744591
[primaryMapped] =>
[pairedReads] => 705400506
[meanInsertSize] => 415.22
[meanReadDepth] => 35.38
[variantsCalled] => 6350086
[variantsFiltered] => 5997506
[snpCount] => 4193733
[snpHom] => 1884629
[snpHet] => 2309104
[indelCount] => 1814102
[insHom] => 307654
[delHom] => 430544
[insHet] => 503078
[delHet] => 611567
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ21817160
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817160/SHD_39749-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242