Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190100
                    [wgsExptID] => 18
                    [Batch] => Edinburgh_8
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 17
                    [DateSubmitted] => 2017-12-12
                    [FastqID] => 250
                    [wgsID] => 306
                    [fwdFile] => SHP_34234_R1.fastq.gz
                    [fwdMd5] => 85b6092abde5146acd930a54f3e3bef4
                    [revFile] => SHP_34234_R2.fastq.gz
                    [revMd5] => 74f10aaffeb1211a448f3d20521f3524
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10664703
                    [enaRun] => ERR11256494
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 267
                    [wgsID] => 306
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-11-24 12:34:00
                    [dateCompleted] => 2022-11-25 07:47:00
                    [bamMd5] => a810349c8c49008788f036dfaa417107
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 940403015
                    [primaryReads] => 
                    [mappedReads] => 934653865
                    [primaryMapped] => 
                    [pairedReads] => 912081278
                    [meanInsertSize] => 501.77
                    [meanReadDepth] => 45.89
                    [variantsCalled] => 7703978
                    [variantsFiltered] => 7243095
                    [snpCount] => 5139514
                    [snpHom] => 2049600
                    [snpHet] => 3089914
                    [indelCount] => 2118883
                    [insHom] => 306335
                    [delHom] => 415023
                    [insHet] => 660478
                    [delHet] => 788146
                    [genomicsDB] => cf4-utility
                    [varsity] => 0
                    [enaAnalysis] => ERZ21778104
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21778104/SHP_34234-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242