Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190101
[wgsExptID] => 18
[Batch] => Edinburgh_8
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 17
[DateSubmitted] => 2017-12-12
[FastqID] => 251
[wgsID] => 307
[fwdFile] => SHP_34235_R1.fastq.gz
[fwdMd5] => e1f7bf47c2aac81ed788dec63a58ea55
[revFile] => SHP_34235_R2.fastq.gz
[revMd5] => 812354f4dff825c47ca074953767e58f
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10664704
[enaRun] => ERR11256495
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 268
[wgsID] => 307
[refGenome] => cf4
[dateSubmitted] => 2022-11-24 12:34:00
[dateCompleted] => 2022-11-25 07:44:00
[bamMd5] => fc2b1cd553d52c0775b8c9b79c23b271
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 959932379
[primaryReads] =>
[mappedReads] => 955239134
[primaryMapped] =>
[pairedReads] => 932249016
[meanInsertSize] => 517.13
[meanReadDepth] => 47.97
[variantsCalled] => 7771750
[variantsFiltered] => 7313283
[snpCount] => 5196687
[snpHom] => 2049810
[snpHet] => 3146877
[indelCount] => 2132433
[insHom] => 309943
[delHom] => 416121
[insHet] => 671481
[delHet] => 790029
[genomicsDB] => cf4-utility
[varsity] => 0
[enaAnalysis] => ERZ21778105
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21778105/SHP_34235-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242