Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190101
                    [wgsExptID] => 18
                    [Batch] => Edinburgh_8
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 17
                    [DateSubmitted] => 2017-12-12
                    [FastqID] => 251
                    [wgsID] => 307
                    [fwdFile] => SHP_34235_R1.fastq.gz
                    [fwdMd5] => e1f7bf47c2aac81ed788dec63a58ea55
                    [revFile] => SHP_34235_R2.fastq.gz
                    [revMd5] => 812354f4dff825c47ca074953767e58f
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10664704
                    [enaRun] => ERR11256495
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 268
                    [wgsID] => 307
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-11-24 12:34:00
                    [dateCompleted] => 2022-11-25 07:44:00
                    [bamMd5] => fc2b1cd553d52c0775b8c9b79c23b271
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 959932379
                    [primaryReads] => 
                    [mappedReads] => 955239134
                    [primaryMapped] => 
                    [pairedReads] => 932249016
                    [meanInsertSize] => 517.13
                    [meanReadDepth] => 47.97
                    [variantsCalled] => 7771750
                    [variantsFiltered] => 7313283
                    [snpCount] => 5196687
                    [snpHom] => 2049810
                    [snpHet] => 3146877
                    [indelCount] => 2132433
                    [insHom] => 309943
                    [delHom] => 416121
                    [insHet] => 671481
                    [delHet] => 790029
                    [genomicsDB] => cf4-utility
                    [varsity] => 0
                    [enaAnalysis] => ERZ21778105
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21778105/SHP_34235-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242