Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190011
[wgsExptID] => 22
[Batch] => Edinburgh_12
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 20
[DateSubmitted] =>
[FastqID] => 252
[wgsID] => 65
[fwdFile] => SHP_35482_R1.fastq.gz
[fwdMd5] => e615d30d475455f3b44b3a84bb7e175d
[revFile] => SHP_35482_R2.fastq.gz
[revMd5] => 6395e65dc42272fb35331f349c0be8b5
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX7019039
[enaRun] => ERR7448285
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 106
[wgsID] => 65
[refGenome] => cf4
[dateSubmitted] => 2022-09-08 13:50:00
[dateCompleted] => 2022-09-09 10:22:00
[bamMd5] => 23dd7e530b94a783b9627850a37bdf09
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 762983092
[primaryReads] =>
[mappedReads] => 760443867
[primaryMapped] =>
[pairedReads] => 741728846
[meanInsertSize] => 531.14
[meanReadDepth] => 28.10
[variantsCalled] => 7503822
[variantsFiltered] => 7105088
[snpCount] => 5037608
[snpHom] => 2014144
[snpHet] => 3023464
[indelCount] => 2081831
[insHom] => 296787
[delHom] => 408514
[insHet] => 647084
[delHet] => 778379
[genomicsDB] => cf4-utility
[varsity] => 0
[enaAnalysis] => ERZ21659985
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659985/SHP_35482-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242