Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190011
                    [wgsExptID] => 22
                    [Batch] => Edinburgh_12
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 20
                    [DateSubmitted] => 
                    [FastqID] => 252
                    [wgsID] => 65
                    [fwdFile] => SHP_35482_R1.fastq.gz
                    [fwdMd5] => e615d30d475455f3b44b3a84bb7e175d
                    [revFile] => SHP_35482_R2.fastq.gz
                    [revMd5] => 6395e65dc42272fb35331f349c0be8b5
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX7019039
                    [enaRun] => ERR7448285
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 106
                    [wgsID] => 65
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-09-08 13:50:00
                    [dateCompleted] => 2022-09-09 10:22:00
                    [bamMd5] => 23dd7e530b94a783b9627850a37bdf09
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 762983092
                    [primaryReads] => 
                    [mappedReads] => 760443867
                    [primaryMapped] => 
                    [pairedReads] => 741728846
                    [meanInsertSize] => 531.14
                    [meanReadDepth] => 28.10
                    [variantsCalled] => 7503822
                    [variantsFiltered] => 7105088
                    [snpCount] => 5037608
                    [snpHom] => 2014144
                    [snpHet] => 3023464
                    [indelCount] => 2081831
                    [insHom] => 296787
                    [delHom] => 408514
                    [insHet] => 647084
                    [delHet] => 778379
                    [genomicsDB] => cf4-utility
                    [varsity] => 0
                    [enaAnalysis] => ERZ21659985
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659985/SHP_35482-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242