Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7189958
                    [wgsExptID] => 3
                    [Batch] => Oxford_2
                    [SeqLaboratory] => Wellcome Trust Centre for Human Genetics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq 1000
                    [ReadType] => 100bp:PAIRED
                    [LibraryPrep] => WTCHG, NEBnext ultra
                    [PcrFree] => N
                    [SampleCount] => 4
                    [DateSubmitted] => 
                    [FastqID] => 451
                    [wgsID] => 89
                    [fwdFile] => SHY_25314_R1.fastq.gz
                    [fwdMd5] => 44d263b96bb5802f0b4c7a871b8542e1
                    [revFile] => SHY_25314_R2.fastq.gz
                    [revMd5] => 4a1de6e0506c64bb1379fdd4550287a9
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10158673
                    [enaRun] => ERR10691966
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 233
                    [wgsID] => 89
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-11-20 11:13:00
                    [dateCompleted] => 2022-11-21 05:05:00
                    [bamMd5] => 4bdc9caacbfe12f6beb8d0e175471c59
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 828196885
                    [primaryReads] => 
                    [mappedReads] => 676957569
                    [primaryMapped] => 
                    [pairedReads] => 659560300
                    [meanInsertSize] => 346.19
                    [meanReadDepth] => 24.61
                    [variantsCalled] => 6687699
                    [variantsFiltered] => 6337291
                    [snpCount] => 4638596
                    [snpHom] => 2034408
                    [snpHet] => 2604188
                    [indelCount] => 1706846
                    [insHom] => 302119
                    [delHom] => 422348
                    [insHet] => 435438
                    [delHet] => 570646
                    [genomicsDB] => cf4-working
                    [varsity] => 0
                    [enaAnalysis] => ERZ21790190
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21790190/SHY_25314-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242