Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190163
[wgsExptID] => 14
[Batch] => Edinburgh_4
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 13
[DateSubmitted] =>
[FastqID] => 254
[wgsID] => 230
[fwdFile] => SHY_32547_R1.fastq.gz
[fwdMd5] => 850fd3dfef3f4c349a8e6ec001508ef4
[revFile] => SHY_32547_R2.fastq.gz
[revMd5] => f354e73087e9fdda8639cef55a309a35
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10679366
[enaRun] => ERR11271796
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 257
[wgsID] => 230
[refGenome] => cf4
[dateSubmitted] => 2022-11-23 08:47:00
[dateCompleted] => 2022-11-24 11:32:00
[bamMd5] => df97d7f973dacb9d7561982674e4fb55
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 1003830609
[primaryReads] =>
[mappedReads] => 981048015
[primaryMapped] =>
[pairedReads] => 960171256
[meanInsertSize] => 440.02
[meanReadDepth] => 33.57
[variantsCalled] => 7363569
[variantsFiltered] => 7021260
[snpCount] => 4984983
[snpHom] => 1896221
[snpHet] => 3088762
[indelCount] => 2049973
[insHom] => 295136
[delHom] => 401915
[insHet] => 633839
[delHet] => 767710
[genomicsDB] => cf4-working
[varsity] => 0
[enaAnalysis] => ERZ21517648
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ215/ERZ21517648/SHY_32547-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242