Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721127
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 610
[wgsID] => 379
[fwdFile] => SI_39662_R1.fastq.gz
[fwdMd5] => cb89dfeb4b96f8f3d85c919ea1031312
[revFile] => SI_39662_R2.fastq.gz
[revMd5] => 71bf18d6c5de7023f2591e69960fabf1
[rawReads] => 871018474
[FastqRCS] => 1
[enaExperiment] => ERX10632449
[enaRun] => ERR11203065
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 829
[wgsID] => 379
[refGenome] => cf4
[dateSubmitted] => 2023-06-16 10:40:00
[dateCompleted] => 2023-06-17 03:14:00
[bamMd5] => 8a097a8a0aafc3bd98282ef7b40896c1
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 879896689
[primaryReads] =>
[mappedReads] => 878780195
[primaryMapped] =>
[pairedReads] => 857665628
[meanInsertSize] => 404.35
[meanReadDepth] => 42.66
[variantsCalled] => 6646665
[variantsFiltered] => 6264034
[snpCount] => 4384865
[snpHom] => 1733370
[snpHet] => 2651495
[indelCount] => 1891085
[insHom] => 276849
[delHom] => 391482
[insHet] => 574834
[delHet] => 694081
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ21817162
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817162/SI_39662-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242