Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMN03168387
[wgsExptID] => 0
[Batch] => Downloaded
[SeqLaboratory] => Various
[Platform] => Various
[InstrumentModel] => Various
[ReadType] =>
[LibraryPrep] =>
[PcrFree] =>
[SampleCount] =>
[DateSubmitted] =>
[FastqID] => 741
[wgsID] => 443
[fwdFile] => SRR2827576_1.fastq.gz
[fwdMd5] =>
[revFile] => SRR2827576_2.fastq.gz
[revMd5] =>
[rawReads] => 413569460
[FastqRCS] => 0
[enaExperiment] => SRX1386878
[enaRun] => SRR2827576
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1650
[wgsID] => 443
[refGenome] => cf4
[dateSubmitted] => 2024-05-15 10:33:12
[dateCompleted] => 2024-05-15 22:21:42
[bamMd5] => 37a6ca2fbe9f1be43ca827769096d519
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 413515592
[primaryReads] => 412747364
[mappedReads] => 412591526
[primaryMapped] => 411823298
[pairedReads] => 408409238
[meanInsertSize] => 458.61
[meanReadDepth] => 15.97
[variantsCalled] => 5585710
[variantsFiltered] => 5310265
[snpCount] => 3844212
[snpHom] =>
[snpHet] =>
[indelCount] => 1472308
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] =>
[enaBam] =>
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
|---|
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242
