Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190000
[wgsExptID] => 22
[Batch] => Edinburgh_12
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 20
[DateSubmitted] =>
[FastqID] => 109
[wgsID] => 52
[fwdFile] => BaH_25392_R1.fastq.gz
[fwdMd5] => 35ab6c959f6715d554a8f1eb57212e48
[revFile] => BaH_25392_R2.fastq.gz
[revMd5] => 16b9457116fea39004e403dcd6ee5313
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX7019028
[enaRun] => ERR7448274
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 95
[wgsID] => 52
[refGenome] => cf4
[dateSubmitted] => 2022-09-06 13:06:00
[dateCompleted] => 2022-09-07 08:41:00
[bamMd5] => 8f4b504d6ce7df284f2cbe120f205c6f
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 968486951
[primaryReads] =>
[mappedReads] => 865832041
[primaryMapped] =>
[pairedReads] => 849201900
[meanInsertSize] => 519.57
[meanReadDepth] => 43.90
[variantsCalled] => 6394557
[variantsFiltered] => 6030144
[snpCount] => 4204863
[snpHom] => 1902183
[snpHet] => 2302680
[indelCount] => 1836240
[insHom] => 296235
[delHom] => 417323
[insHet] => 520312
[delHet] => 641635
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ21659970
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659970/BaH_25392-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242