Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190000
                    [wgsExptID] => 22
                    [Batch] => Edinburgh_12
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 20
                    [DateSubmitted] => 
                    [FastqID] => 109
                    [wgsID] => 52
                    [fwdFile] => BaH_25392_R1.fastq.gz
                    [fwdMd5] => 35ab6c959f6715d554a8f1eb57212e48
                    [revFile] => BaH_25392_R2.fastq.gz
                    [revMd5] => 16b9457116fea39004e403dcd6ee5313
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX7019028
                    [enaRun] => ERR7448274
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 95
                    [wgsID] => 52
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-09-06 13:06:00
                    [dateCompleted] => 2022-09-07 08:41:00
                    [bamMd5] => 8f4b504d6ce7df284f2cbe120f205c6f
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 968486951
                    [primaryReads] => 
                    [mappedReads] => 865832041
                    [primaryMapped] => 
                    [pairedReads] => 849201900
                    [meanInsertSize] => 519.57
                    [meanReadDepth] => 43.90
                    [variantsCalled] => 6394557
                    [variantsFiltered] => 6030144
                    [snpCount] => 4204863
                    [snpHom] => 1902183
                    [snpHet] => 2302680
                    [indelCount] => 1836240
                    [insHom] => 296235
                    [delHom] => 417323
                    [insHet] => 520312
                    [delHet] => 641635
                    [genomicsDB] => cf4-hound
                    [varsity] => 0
                    [enaAnalysis] => ERZ21659970
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659970/BaH_25392-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242