Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112721125
                    [wgsExptID] => 26
                    [Batch] => CRUKCI_4
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => 
                    [PcrFree] => N
                    [SampleCount] => 60
                    [DateSubmitted] => 2023-02-23
                    [FastqID] => 604
                    [wgsID] => 377
                    [fwdFile] => SS_38777_R1.fastq.gz
                    [fwdMd5] => 3e1fbf8a4feed70a673bbc03903cacc3
                    [revFile] => SS_38777_R2.fastq.gz
                    [revMd5] => b27a01313bcf305a49b09dd94e225372
                    [rawReads] => 717874926
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10632443
                    [enaRun] => ERR11203059
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 823
                    [wgsID] => 377
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-06-16 10:38:00
                    [dateCompleted] => 2023-06-16 22:58:00
                    [bamMd5] => 9579cfd4142febc2425c9a7e835aa277
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 686231251
                    [primaryReads] => 
                    [mappedReads] => 685540966
                    [primaryMapped] => 
                    [pairedReads] => 662546138
                    [meanInsertSize] => 357.34
                    [meanReadDepth] => 32.90
                    [variantsCalled] => 6221593
                    [variantsFiltered] => 5902169
                    [snpCount] => 4127360
                    [snpHom] => 1961778
                    [snpHet] => 2165582
                    [indelCount] => 1784441
                    [insHom] => 320000
                    [delHom] => 446489
                    [insHet] => 474496
                    [delHet] => 579174
                    [genomicsDB] => cf4-pastoral
                    [varsity] => 0
                    [enaAnalysis] => ERZ21817166
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817166/SS_38777-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242