Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721125
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 604
[wgsID] => 377
[fwdFile] => SS_38777_R1.fastq.gz
[fwdMd5] => 3e1fbf8a4feed70a673bbc03903cacc3
[revFile] => SS_38777_R2.fastq.gz
[revMd5] => b27a01313bcf305a49b09dd94e225372
[rawReads] => 717874926
[FastqRCS] => 1
[enaExperiment] => ERX10632443
[enaRun] => ERR11203059
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 823
[wgsID] => 377
[refGenome] => cf4
[dateSubmitted] => 2023-06-16 10:38:00
[dateCompleted] => 2023-06-16 22:58:00
[bamMd5] => 9579cfd4142febc2425c9a7e835aa277
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 686231251
[primaryReads] =>
[mappedReads] => 685540966
[primaryMapped] =>
[pairedReads] => 662546138
[meanInsertSize] => 357.34
[meanReadDepth] => 32.90
[variantsCalled] => 6221593
[variantsFiltered] => 5902169
[snpCount] => 4127360
[snpHom] => 1961778
[snpHet] => 2165582
[indelCount] => 1784441
[insHom] => 320000
[delHom] => 446489
[insHet] => 474496
[delHet] => 579174
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] => ERZ21817166
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817166/SS_38777-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242