Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA11296815
                    [wgsExptID] => 23
                    [Batch] => CRUKCI_1
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina DNA Prep
                    [PcrFree] => N
                    [SampleCount] => 23
                    [DateSubmitted] => 2021-06-11
                    [FastqID] => 629
                    [wgsID] => 6
                    [fwdFile] => STB_35038_R1.fastq.gz
                    [fwdMd5] => 77a0ae18514e38222bbff20645faeb28
                    [revFile] => STB_35038_R2.fastq.gz
                    [revMd5] => 93bc9f0ec15743cdbcd97bedbda9da33
                    [rawReads] => 960127290
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10830374
                    [enaRun] => ERR11423066
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 50
                    [wgsID] => 6
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-07-07 10:58:00
                    [dateCompleted] => 2023-07-08 00:37:00
                    [bamMd5] => bef49b6e934672edd11059390682f522
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 319024924
                    [primaryReads] => 
                    [mappedReads] => 317848104
                    [primaryMapped] => 
                    [pairedReads] => 305791026
                    [meanInsertSize] => 332.38
                    [meanReadDepth] => 14.92
                    [variantsCalled] => 5749135
                    [variantsFiltered] => 5511964
                    [snpCount] => 3891921
                    [snpHom] => 2135812
                    [snpHet] => 1756109
                    [indelCount] => 1626392
                    [insHom] => 357113
                    [delHom] => 498724
                    [insHet] => 348618
                    [delHet] => 443163
                    [genomicsDB] => cf4-working
                    [varsity] => 0
                    [enaAnalysis] => ERZ21659501
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659501/STB_35038-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242