Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099852
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 863
                    [wgsID] => 546
                    [fwdFile] => STB_41493_R1.fastq.gz
                    [fwdMd5] => 4b73dabe9ad77af411ce1d3d0b448310
                    [revFile] => STB_41493_R2.fastq.gz
                    [revMd5] => c10e879972f8ff970144033e87d3f321
                    [rawReads] => 987127742
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611295
                    [enaRun] => ERR14209075
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1736
                    [wgsID] => 546
                    [refGenome] => cf4
                    [dateSubmitted] => 2025-01-06 11:10:13
                    [dateCompleted] => 2025-01-07 15:24:12
                    [bamMd5] => bafba958e8bf109f55a6871b3b1bb205
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 815656243
                    [primaryReads] => 808881964
                    [mappedReads] => 814653477
                    [primaryMapped] => 807879198
                    [pairedReads] => 793308182
                    [meanInsertSize] => 400.13
                    [meanReadDepth] => 33.53
                    [variantsCalled] => 6176679
                    [variantsFiltered] => 5870040
                    [snpCount] => 4153143
                    [snpHom] => 1904544
                    [snpHet] => 2248599
                    [indelCount] => 1725595
                    [insHom] => 345356
                    [delHom] => 468689
                    [insHet] => 425447
                    [delHet] => 519888
                    [genomicsDB] => cf4-working
                    [varsity] => 0
                    [enaAnalysis] => ERZ25759327
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759327/STB_41493-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242