Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112721132
                    [wgsExptID] => 26
                    [Batch] => CRUKCI_4
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => 
                    [PcrFree] => N
                    [SampleCount] => 60
                    [DateSubmitted] => 2023-02-23
                    [FastqID] => 564
                    [wgsID] => 385
                    [fwdFile] => STZ_19109_R1.fastq.gz
                    [fwdMd5] => d26ca7b14f112a152705e8c07a3cf914
                    [revFile] => STZ_19109_R2.fastq.gz
                    [revMd5] => de719b9043721d516129e2dacffd120d
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10632402
                    [enaRun] => ERR11203019
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 783
                    [wgsID] => 385
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-05-22 14:14:00
                    [dateCompleted] => 2023-05-23 10:14:00
                    [bamMd5] => 1ae3a365430861fb3023df2fa18cb893
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 681776315
                    [primaryReads] => 
                    [mappedReads] => 680946325
                    [primaryMapped] => 
                    [pairedReads] => 660766846
                    [meanInsertSize] => 395.62
                    [meanReadDepth] => 33.05
                    [variantsCalled] => 6709910
                    [variantsFiltered] => 6329917
                    [snpCount] => 4457672
                    [snpHom] => 1968654
                    [snpHet] => 2489018
                    [indelCount] => 1883302
                    [insHom] => 317660
                    [delHom] => 438339
                    [insHet] => 528785
                    [delHet] => 638550
                    [genomicsDB] => cf4-utility
                    [varsity] => 0
                    [enaAnalysis] => ERZ21817167
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817167/STZ_19109-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242