Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112721133
                    [wgsExptID] => 26
                    [Batch] => CRUKCI_4
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => 
                    [PcrFree] => N
                    [SampleCount] => 60
                    [DateSubmitted] => 2023-02-23
                    [FastqID] => 566
                    [wgsID] => 386
                    [fwdFile] => STZ_19113_R1.fastq.gz
                    [fwdMd5] => a870d58011e9ce0702eda86e7b5158c8
                    [revFile] => STZ_19113_R2.fastq.gz
                    [revMd5] => eea6f863edc9df830cd3c8d3fab8ca45
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10632405
                    [enaRun] => ERR11203021
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 785
                    [wgsID] => 386
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-05-22 14:19:00
                    [dateCompleted] => 2023-05-23 08:57:00
                    [bamMd5] => 2c9c7de8ad7588e5f03cc9ba933b66f4
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 722768192
                    [primaryReads] => 
                    [mappedReads] => 721610351
                    [primaryMapped] => 
                    [pairedReads] => 700659884
                    [meanInsertSize] => 424.74
                    [meanReadDepth] => 35.75
                    [variantsCalled] => 6685928
                    [variantsFiltered] => 6297117
                    [snpCount] => 4427694
                    [snpHom] => 2018390
                    [snpHet] => 2409304
                    [indelCount] => 1880544
                    [insHom] => 325679
                    [delHom] => 447899
                    [insHet] => 522600
                    [delHet] => 624854
                    [genomicsDB] => cf4-utility
                    [varsity] => 0
                    [enaAnalysis] => ERZ21817169
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817169/STZ_19113-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242