Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7189996
[wgsExptID] => 22
[Batch] => Edinburgh_12
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 20
[DateSubmitted] =>
[FastqID] => 110
[wgsID] => 53
[fwdFile] => BaH_25393_R1.fastq.gz
[fwdMd5] => be6572536e0aac35c6d927931d3a7052
[revFile] => BaH_25393_R2.fastq.gz
[revMd5] => 74d264ca041ca9269492e6a35056189e
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX7019024
[enaRun] => ERR7448270
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 91
[wgsID] => 53
[refGenome] => cf4
[dateSubmitted] => 2022-09-06 12:51:00
[dateCompleted] => 2022-09-07 07:51:00
[bamMd5] => 028129aefe84d660a26200b3c78041bb
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 1011392304
[primaryReads] =>
[mappedReads] => 789232900
[primaryMapped] =>
[pairedReads] => 772551810
[meanInsertSize] => 513.23
[meanReadDepth] => 38.60
[variantsCalled] => 6119656
[variantsFiltered] => 5761305
[snpCount] => 4004980
[snpHom] => 2134771
[snpHet] => 1870209
[indelCount] => 1765708
[insHom] => 337891
[delHom] => 470833
[insHet] => 444106
[delHet] => 544710
[genomicsDB] => cf4-hound
[varsity] => 0
[enaAnalysis] => ERZ21659971
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659971/BaH_25393-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242