Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190102
[wgsExptID] => 18
[Batch] => Edinburgh_8
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 17
[DateSubmitted] => 2017-12-12
[FastqID] => 256
[wgsID] => 295
[fwdFile] => STZ_21669_R1.fastq.gz
[fwdMd5] => f3abac7f413484c9cd0222d923d1093d
[revFile] => STZ_21669_R2.fastq.gz
[revMd5] => e223c5421cec34002e4d3c1b25f0c2a9
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10664692
[enaRun] => ERR11256483
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 421
[wgsID] => 295
[refGenome] => cf4
[dateSubmitted] => 2022-12-22 10:15:00
[dateCompleted] => 2022-12-23 03:28:00
[bamMd5] => 054e02c437e4e70298bc7c7f821c01a2
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 947163765
[primaryReads] =>
[mappedReads] => 873049852
[primaryMapped] =>
[pairedReads] => 854468402
[meanInsertSize] => 492.92
[meanReadDepth] => 45.40
[variantsCalled] => 6671602
[variantsFiltered] => 6273406
[snpCount] => 4394246
[snpHom] => 2024961
[snpHet] => 2369285
[indelCount] => 1890960
[insHom] => 324335
[delHom] => 442847
[insHet] => 532821
[delHet] => 633780
[genomicsDB] => cf4-utility
[varsity] => 0
[enaAnalysis] => ERZ21778106
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21778106/STZ_21669-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242