Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA112721149
                    [wgsExptID] => 26
                    [Batch] => CRUKCI_4
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq 6000
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => 
                    [PcrFree] => N
                    [SampleCount] => 60
                    [DateSubmitted] => 2023-02-23
                    [FastqID] => 569
                    [wgsID] => 409
                    [fwdFile] => STZ_23310_R1.fastq.gz
                    [fwdMd5] => c9c6a07d3e478cf3c39882aa291a1f07
                    [revFile] => STZ_23310_R2.fastq.gz
                    [revMd5] => b3a70c0618f87a853cf22b2eed502aae
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10632408
                    [enaRun] => ERR11203024
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 788
                    [wgsID] => 409
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-05-22 14:19:00
                    [dateCompleted] => 2023-05-23 05:27:00
                    [bamMd5] => 831ecc1d4a7beca69c97029a6d8d4d27
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 487891150
                    [primaryReads] => 
                    [mappedReads] => 486658231
                    [primaryMapped] => 
                    [pairedReads] => 465794208
                    [meanInsertSize] => 398.68
                    [meanReadDepth] => 23.11
                    [variantsCalled] => 6640983
                    [variantsFiltered] => 6333807
                    [snpCount] => 4476084
                    [snpHom] => 1953541
                    [snpHet] => 2522543
                    [indelCount] => 1868406
                    [insHom] => 319228
                    [delHom] => 442690
                    [insHet] => 516760
                    [delHet] => 627103
                    [genomicsDB] => cf4-utility
                    [varsity] => 0
                    [enaAnalysis] => ERZ21817170
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817170/STZ_23310-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242