Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721149
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 569
[wgsID] => 409
[fwdFile] => STZ_23310_R1.fastq.gz
[fwdMd5] => c9c6a07d3e478cf3c39882aa291a1f07
[revFile] => STZ_23310_R2.fastq.gz
[revMd5] => b3a70c0618f87a853cf22b2eed502aae
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10632408
[enaRun] => ERR11203024
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 788
[wgsID] => 409
[refGenome] => cf4
[dateSubmitted] => 2023-05-22 14:19:00
[dateCompleted] => 2023-05-23 05:27:00
[bamMd5] => 831ecc1d4a7beca69c97029a6d8d4d27
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 487891150
[primaryReads] =>
[mappedReads] => 486658231
[primaryMapped] =>
[pairedReads] => 465794208
[meanInsertSize] => 398.68
[meanReadDepth] => 23.11
[variantsCalled] => 6640983
[variantsFiltered] => 6333807
[snpCount] => 4476084
[snpHom] => 1953541
[snpHet] => 2522543
[indelCount] => 1868406
[insHom] => 319228
[delHom] => 442690
[insHet] => 516760
[delHet] => 627103
[genomicsDB] => cf4-utility
[varsity] => 0
[enaAnalysis] => ERZ21817170
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817170/STZ_23310-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242