Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA11296822
[wgsExptID] => 23
[Batch] => CRUKCI_1
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina DNA Prep
[PcrFree] => N
[SampleCount] => 23
[DateSubmitted] => 2021-06-11
[FastqID] => 630
[wgsID] => 7
[fwdFile] => STZ_35085_R1.fastq.gz
[fwdMd5] => 11f36434e997b718d9a5a72efd11f5d2
[revFile] => STZ_35085_R2.fastq.gz
[revMd5] => 4dfcabf17d7998e79cf97549a9119a23
[rawReads] => 843437116
[FastqRCS] => 1
[enaExperiment] => ERX10830375
[enaRun] => ERR11423067
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 43
[wgsID] => 7
[refGenome] => cf4
[dateSubmitted] => 2023-07-11 16:12:00
[dateCompleted] => 2023-07-12 09:22:00
[bamMd5] => db086b91f6e22c0d0ac5eeaac443592e
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 747914059
[primaryReads] =>
[mappedReads] => 746983556
[primaryMapped] =>
[pairedReads] => 729438808
[meanInsertSize] => 365.32
[meanReadDepth] => 36.80
[variantsCalled] => 7099672
[variantsFiltered] => 6748145
[snpCount] => 4764712
[snpHom] => 1500444
[snpHet] => 3264268
[indelCount] => 1997118
[insHom] => 230329
[delHom] => 333156
[insHet] => 667656
[delHet] => 819093
[genomicsDB] => cf4-utility
[varsity] => 0
[enaAnalysis] => ERZ21659502
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659502/STZ_35085-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242