Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA112721121
[wgsExptID] => 26
[Batch] => CRUKCI_4
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] =>
[PcrFree] => N
[SampleCount] => 60
[DateSubmitted] => 2023-02-23
[FastqID] => 591
[wgsID] => 373
[fwdFile] => STZ_37750_R1.fastq.gz
[fwdMd5] => 025a32deae1cb16fcfb36139bfc8d146
[revFile] => STZ_37750_R2.fastq.gz
[revMd5] => c6b70727bac7e462efc6fbbc6f22ebab
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10632430
[enaRun] => ERR11203046
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 810
[wgsID] => 373
[refGenome] => cf4
[dateSubmitted] => 2023-05-22 14:20:00
[dateCompleted] => 2023-05-23 14:03:00
[bamMd5] => c76bd2e4fe1363fcce7f28ac49d64f38
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 839542080
[primaryReads] =>
[mappedReads] => 838603093
[primaryMapped] =>
[pairedReads] => 804732060
[meanInsertSize] => 373.28
[meanReadDepth] => 41.30
[variantsCalled] => 6704570
[variantsFiltered] => 6319386
[snpCount] => 4445836
[snpHom] => 2040178
[snpHet] => 2405658
[indelCount] => 1884794
[insHom] => 332169
[delHom] => 456703
[insHet] => 516831
[delHet] => 618802
[genomicsDB] => cf4-utility
[varsity] => 0
[enaAnalysis] => ERZ21817171
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ218/ERZ21817171/STZ_37750-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242