Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7189972
                    [wgsExptID] => 8
                    [Batch] => Oxford_5
                    [SeqLaboratory] => Wellcome Trust Centre for Human Genetics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq4000
                    [ReadType] => 100bp:PAIRED:20X
                    [LibraryPrep] => WTCHG, PCR FREE
                    [PcrFree] => Y
                    [SampleCount] => 5
                    [DateSubmitted] => 
                    [FastqID] => 465
                    [wgsID] => 109
                    [fwdFile] => ST_25135_R1.fastq.gz
                    [fwdMd5] => 765f7aaa5a860c35ddcaad2ec69e4b28
                    [revFile] => ST_25135_R2.fastq.gz
                    [revMd5] => 92f3370de67f5affc9e2972cbdb81ea9
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10825751
                    [enaRun] => ERR11417905
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 166
                    [wgsID] => 109
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-10-17 08:46:00
                    [dateCompleted] => 2022-10-18 15:18:00
                    [bamMd5] => 3d95e70136e2a9f73146eb1c3b8553ac
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 594288258
                    [primaryReads] => 
                    [mappedReads] => 580828242
                    [primaryMapped] => 
                    [pairedReads] => 565739140
                    [meanInsertSize] => 260.98
                    [meanReadDepth] => 19.41
                    [variantsCalled] => 5171831
                    [variantsFiltered] => 4912595
                    [snpCount] => 3521776
                    [snpHom] => 
                    [snpHet] => 
                    [indelCount] => 1394719
                    [insHom] => 
                    [delHom] => 
                    [insHet] => 
                    [delHet] => 
                    [genomicsDB] => cf4-terrier
                    [varsity] => 0
                    [enaAnalysis] => ERZ21789626
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21789626/ST_25135-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242