Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7189972
[wgsExptID] => 8
[Batch] => Oxford_5
[SeqLaboratory] => Wellcome Trust Centre for Human Genetics
[Platform] => Illumina
[InstrumentModel] => HiSeq4000
[ReadType] => 100bp:PAIRED:20X
[LibraryPrep] => WTCHG, PCR FREE
[PcrFree] => Y
[SampleCount] => 5
[DateSubmitted] =>
[FastqID] => 465
[wgsID] => 109
[fwdFile] => ST_25135_R1.fastq.gz
[fwdMd5] => 765f7aaa5a860c35ddcaad2ec69e4b28
[revFile] => ST_25135_R2.fastq.gz
[revMd5] => 92f3370de67f5affc9e2972cbdb81ea9
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10825751
[enaRun] => ERR11417905
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 166
[wgsID] => 109
[refGenome] => cf4
[dateSubmitted] => 2022-10-17 08:46:00
[dateCompleted] => 2022-10-18 15:18:00
[bamMd5] => 3d95e70136e2a9f73146eb1c3b8553ac
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 594288258
[primaryReads] =>
[mappedReads] => 580828242
[primaryMapped] =>
[pairedReads] => 565739140
[meanInsertSize] => 260.98
[meanReadDepth] => 19.41
[variantsCalled] => 5171831
[variantsFiltered] => 4912595
[snpCount] => 3521776
[snpHom] =>
[snpHet] =>
[indelCount] => 1394719
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-terrier
[varsity] => 0
[enaAnalysis] => ERZ21789626
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21789626/ST_25135-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242