Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA104139329
                    [wgsExptID] => 7
                    [Batch] => Oxford_4
                    [SeqLaboratory] => Wellcome Trust Centre for Human Genetics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq4000
                    [ReadType] => 100bp:PAIRED:20X
                    [LibraryPrep] => WTCHG, PCR FREE
                    [PcrFree] => Y
                    [SampleCount] => 2
                    [DateSubmitted] => 
                    [FastqID] => 462
                    [wgsID] => 105
                    [fwdFile] => SV_25951_R1.fastq.gz
                    [fwdMd5] => 7adb4bf46613c767802fac8739611d8c
                    [revFile] => SV_25951_R2.fastq.gz
                    [revMd5] => 38a51fbb89962f0001b6a81c60d8a291
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX2841085
                    [enaRun] => ERR2834335
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 283
                    [wgsID] => 105
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-02-09 11:02:00
                    [dateCompleted] => 2023-02-09 21:52:00
                    [bamMd5] => c03941c051a9e1ac2c136eb7affd8f9c
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 646295867
                    [primaryReads] => 
                    [mappedReads] => 644173574
                    [primaryMapped] => 
                    [pairedReads] => 627922906
                    [meanInsertSize] => 236.95
                    [meanReadDepth] => 21.20
                    [variantsCalled] => 5715949
                    [variantsFiltered] => 5454522
                    [snpCount] => 3908767
                    [snpHom] => 
                    [snpHet] => 
                    [indelCount] => 1552197
                    [insHom] => 
                    [delHom] => 
                    [insHet] => 
                    [delHet] => 
                    [genomicsDB] => cf4-pastoral
                    [varsity] => 0
                    [enaAnalysis] => ERZ21790201
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21790201/SV_25951-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242