Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA104139329
[wgsExptID] => 7
[Batch] => Oxford_4
[SeqLaboratory] => Wellcome Trust Centre for Human Genetics
[Platform] => Illumina
[InstrumentModel] => HiSeq4000
[ReadType] => 100bp:PAIRED:20X
[LibraryPrep] => WTCHG, PCR FREE
[PcrFree] => Y
[SampleCount] => 2
[DateSubmitted] =>
[FastqID] => 462
[wgsID] => 105
[fwdFile] => SV_25951_R1.fastq.gz
[fwdMd5] => 7adb4bf46613c767802fac8739611d8c
[revFile] => SV_25951_R2.fastq.gz
[revMd5] => 38a51fbb89962f0001b6a81c60d8a291
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX2841085
[enaRun] => ERR2834335
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 283
[wgsID] => 105
[refGenome] => cf4
[dateSubmitted] => 2023-02-09 11:02:00
[dateCompleted] => 2023-02-09 21:52:00
[bamMd5] => c03941c051a9e1ac2c136eb7affd8f9c
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 646295867
[primaryReads] =>
[mappedReads] => 644173574
[primaryMapped] =>
[pairedReads] => 627922906
[meanInsertSize] => 236.95
[meanReadDepth] => 21.20
[variantsCalled] => 5715949
[variantsFiltered] => 5454522
[snpCount] => 3908767
[snpHom] =>
[snpHet] =>
[indelCount] => 1552197
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-pastoral
[varsity] => 0
[enaAnalysis] => ERZ21790201
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21790201/SV_25951-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242