Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190226
[wgsExptID] => 12
[Batch] => Edinburgh_2
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 36
[DateSubmitted] =>
[FastqID] => 258
[wgsID] => 136
[fwdFile] => TT_23713_R1.fastq.gz
[fwdMd5] => a4fbb772e9e2cfbc652158411e7a25c1
[revFile] => TT_23713_R2.fastq.gz
[revMd5] => d380f8b1825ebd3039be8e64d844e09a
[rawReads] => 979391716
[FastqRCS] => 1
[enaExperiment] => ERX10686600
[enaRun] => ERR11278900
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 309
[wgsID] => 136
[refGenome] => cf4
[dateSubmitted] => 2023-03-14 09:54:00
[dateCompleted] => 2023-03-15 03:01:00
[bamMd5] => 220805ac349cd4af97f615c0eb8899b7
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 876878889
[primaryReads] =>
[mappedReads] => 875233490
[primaryMapped] =>
[pairedReads] => 858732026
[meanInsertSize] => 452.45
[meanReadDepth] => 41.47
[variantsCalled] => 6830161
[variantsFiltered] => 6450057
[snpCount] => 4528480
[snpHom] =>
[snpHet] =>
[indelCount] => 1934616
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-utility
[varsity] => 0
[enaAnalysis] => ERZ21783014
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21783014/TT_23713-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242