Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190010
                    [wgsExptID] => 22
                    [Batch] => Edinburgh_12
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 20
                    [DateSubmitted] => 
                    [FastqID] => 260
                    [wgsID] => 60
                    [fwdFile] => TT_32776_R1.fastq.gz
                    [fwdMd5] => 9f5eb3472ad7517a7c128fe774766b09
                    [revFile] => TT_32776_R2.fastq.gz
                    [revMd5] => 32058c6b0e666685f2826c65a3163d09
                    [rawReads] => 950890956
                    [FastqRCS] => 1
                    [enaExperiment] => ERX7019038
                    [enaRun] => ERR7448284
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 105
                    [wgsID] => 60
                    [refGenome] => cf4
                    [dateSubmitted] => 2022-09-08 13:48:00
                    [dateCompleted] => 2022-09-09 08:18:00
                    [bamMd5] => 86cb77972c44e5b83cdcb5d91bad5cc0
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 956081087
                    [primaryReads] => 
                    [mappedReads] => 921645726
                    [primaryMapped] => 
                    [pairedReads] => 904596014
                    [meanInsertSize] => 478.60
                    [meanReadDepth] => 48.27
                    [variantsCalled] => 6922900
                    [variantsFiltered] => 6512848
                    [snpCount] => 4574408
                    [snpHom] => 1835303
                    [snpHet] => 2739105
                    [indelCount] => 1951374
                    [insHom] => 280244
                    [delHom] => 391967
                    [insHet] => 597058
                    [delHet] => 729053
                    [genomicsDB] => cf4-utility
                    [varsity] => 0
                    [enaAnalysis] => ERZ21659986
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659986/TT_32776-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242