Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA11296808
[wgsExptID] => 23
[Batch] => CRUKCI_1
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq 6000
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina DNA Prep
[PcrFree] => N
[SampleCount] => 23
[DateSubmitted] => 2021-06-11
[FastqID] => 625
[wgsID] => 3
[fwdFile] => TT_34729_R1.fastq.gz
[fwdMd5] => ac49b11c821dd6015021ed7f29e72418
[revFile] => TT_34729_R2.fastq.gz
[revMd5] => 1aa2fec3f96fd28ab69b2eb6f004cbfd
[rawReads] => 1108764934
[FastqRCS] => 1
[enaExperiment] => ERX10830370
[enaRun] => ERR11423062
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 30
[wgsID] => 3
[refGenome] => cf4
[dateSubmitted] => 2023-07-07 10:57:00
[dateCompleted] => 2023-07-08 11:08:00
[bamMd5] => c7c3d0d0d402f1ad11ecf5d9c6697de9
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 1097734732
[primaryReads] =>
[mappedReads] => 1096290919
[primaryMapped] =>
[pairedReads] => 1070907752
[meanInsertSize] => 362.87
[meanReadDepth] => 53.42
[variantsCalled] => 6857993
[variantsFiltered] => 6434726
[snpCount] => 4527258
[snpHom] => 1839703
[snpHet] => 2687555
[indelCount] => 1919851
[insHom] => 293892
[delHom] => 411472
[insHet] => 571283
[delHet] => 689692
[genomicsDB] => cf4-utility
[varsity] => 0
[enaAnalysis] => ERZ21659503
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ216/ERZ21659503/TT_34729-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242