Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA7190174
                    [wgsExptID] => 16
                    [Batch] => Edinburgh_6
                    [SeqLaboratory] => Edinburgh Genomics
                    [Platform] => Illumina
                    [InstrumentModel] => HiSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => Edinburgh Genomics, TruSeq Nano
                    [PcrFree] => N
                    [SampleCount] => 9
                    [DateSubmitted] => 
                    [FastqID] => 195
                    [wgsID] => 252
                    [fwdFile] => HWV_33254_R1.fastq.gz
                    [fwdMd5] => 6be77a03a48db2ec8b17df5a029bbf60
                    [revFile] => HWV_33254_R2.fastq.gz
                    [revMd5] => 20738fa825718fb07fa9a1363a4f3b0a
                    [rawReads] => 
                    [FastqRCS] => 1
                    [enaExperiment] => ERX10677693
                    [enaRun] => ERR11270105
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 397
                    [wgsID] => 252
                    [refGenome] => cf4
                    [dateSubmitted] => 2023-03-28 15:38:00
                    [dateCompleted] => 2023-03-29 10:49:00
                    [bamMd5] => 968e8a9fe3cbb6b688b83eead1612be0
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 893699036
                    [primaryReads] => 
                    [mappedReads] => 890088184
                    [primaryMapped] => 
                    [pairedReads] => 871228120
                    [meanInsertSize] => 488.15
                    [meanReadDepth] => 43.20
                    [variantsCalled] => 6445660
                    [variantsFiltered] => 6105770
                    [snpCount] => 4289317
                    [snpHom] => 
                    [snpHet] => 
                    [indelCount] => 1827328
                    [insHom] => 
                    [delHom] => 
                    [insHet] => 
                    [delHet] => 
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ21782178
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21782178/VWH_33254-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242