Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190174
[wgsExptID] => 16
[Batch] => Edinburgh_6
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 9
[DateSubmitted] =>
[FastqID] => 195
[wgsID] => 252
[fwdFile] => HWV_33254_R1.fastq.gz
[fwdMd5] => 6be77a03a48db2ec8b17df5a029bbf60
[revFile] => HWV_33254_R2.fastq.gz
[revMd5] => 20738fa825718fb07fa9a1363a4f3b0a
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10677693
[enaRun] => ERR11270105
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 397
[wgsID] => 252
[refGenome] => cf4
[dateSubmitted] => 2023-03-28 15:38:00
[dateCompleted] => 2023-03-29 10:49:00
[bamMd5] => 968e8a9fe3cbb6b688b83eead1612be0
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 893699036
[primaryReads] =>
[mappedReads] => 890088184
[primaryMapped] =>
[pairedReads] => 871228120
[meanInsertSize] => 488.15
[meanReadDepth] => 43.20
[variantsCalled] => 6445660
[variantsFiltered] => 6105770
[snpCount] => 4289317
[snpHom] =>
[snpHet] =>
[indelCount] => 1827328
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21782178
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21782178/VWH_33254-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242