Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA7190227
[wgsExptID] => 12
[Batch] => Edinburgh_2
[SeqLaboratory] => Edinburgh Genomics
[Platform] => Illumina
[InstrumentModel] => HiSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => Edinburgh Genomics, TruSeq Nano
[PcrFree] => N
[SampleCount] => 36
[DateSubmitted] =>
[FastqID] => 261
[wgsID] => 147
[fwdFile] => V_28763_R1.fastq.gz
[fwdMd5] => 480905c142dc147529215e6a264208dc
[revFile] => V_28763_R2.fastq.gz
[revMd5] => d60720a1d5d6d388aaa7d0a281b283cd
[rawReads] =>
[FastqRCS] => 1
[enaExperiment] => ERX10692169
[enaRun] => ERR11284560
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 320
[wgsID] => 147
[refGenome] => cf4
[dateSubmitted] => 2023-03-14 09:54:00
[dateCompleted] => 2023-03-15 04:00:00
[bamMd5] => f9f49172e000fb82adb58ddd582ba7d6
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 931258507
[primaryReads] =>
[mappedReads] => 929813059
[primaryMapped] =>
[pairedReads] => 912907250
[meanInsertSize] => 454.56
[meanReadDepth] => 42.09
[variantsCalled] => 6373108
[variantsFiltered] => 5999924
[snpCount] => 4184985
[snpHom] =>
[snpHet] =>
[indelCount] => 1826011
[insHom] =>
[delHom] =>
[insHet] =>
[delHet] =>
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ21783015
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ217/ERZ21783015/V_28763-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242