Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099814
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 825
                    [wgsID] => 508
                    [fwdFile] => V_33124_R1.fastq.gz
                    [fwdMd5] => 5152d150723ff92fb7faedd6123ae89f
                    [revFile] => V_33124_R2.fastq.gz
                    [revMd5] => f05e7f383b5bd70cd8a3935e40b3671a
                    [rawReads] => 944160198
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611296
                    [enaRun] => ERR14209076
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1737
                    [wgsID] => 508
                    [refGenome] => cf4
                    [dateSubmitted] => 2025-01-06 11:12:38
                    [dateCompleted] => 2025-01-07 15:03:50
                    [bamMd5] => 7a1505540bb187fc2ced91039182f8f1
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 728609082
                    [primaryReads] => 720136445
                    [mappedReads] => 727623488
                    [primaryMapped] => 719150851
                    [pairedReads] => 707479912
                    [meanInsertSize] => 357.97
                    [meanReadDepth] => 29.67
                    [variantsCalled] => 6364854
                    [variantsFiltered] => 6092113
                    [snpCount] => 4317406
                    [snpHom] => 1748771
                    [snpHet] => 2568635
                    [indelCount] => 1784446
                    [insHom] => 313513
                    [delHom] => 430515
                    [insHet] => 485540
                    [delHet] => 593160
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ25759334
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759334/V_33124-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242