Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099815
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 826
                    [wgsID] => 509
                    [fwdFile] => V_33125_R1.fastq.gz
                    [fwdMd5] => 0840dfc1bce2ccb4dbb84a00ecdadf93
                    [revFile] => V_33125_R2.fastq.gz
                    [revMd5] => 34ed60649b7e86980987b33fba29134a
                    [rawReads] => 1049873586
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611297
                    [enaRun] => ERR14209077
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1752
                    [wgsID] => 509
                    [refGenome] => cf4
                    [dateSubmitted] => 2025-01-10 12:25:31
                    [dateCompleted] => 2025-01-11 09:53:53
                    [bamMd5] => 384a9e2084d04e385f3d0581be531fc2
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 821684162
                    [primaryReads] => 813477964
                    [mappedReads] => 820567525
                    [primaryMapped] => 812361327
                    [pairedReads] => 798976304
                    [meanInsertSize] => 373.95
                    [meanReadDepth] => 31.38
                    [variantsCalled] => 6444520
                    [variantsFiltered] => 6165866
                    [snpCount] => 4359018
                    [snpHom] => 1683641
                    [snpHet] => 2675377
                    [indelCount] => 1817353
                    [insHom] => 297525
                    [delHom] => 411508
                    [insHet] => 519217
                    [delHet] => 631037
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ25759333
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759333/V_33125-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242