Array
(
[experiment] => Array
(
[0] => stdClass Object
(
[BioSample] => SAMEA116099816
[wgsExptID] => 30
[Batch] => CRUKCI_7
[SeqLaboratory] => Cancer Research UK Cambridge Institute
[Platform] => Illumina
[InstrumentModel] => NovaSeq X
[ReadType] => 150bp:PAIRED:30X
[LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
[PcrFree] => Y
[SampleCount] => 53
[DateSubmitted] => 2024-09-06
[FastqID] => 827
[wgsID] => 510
[fwdFile] => V_33216_R1.fastq.gz
[fwdMd5] => e184be6db9a9e0d1b9589ca664aef630
[revFile] => V_33216_R2.fastq.gz
[revMd5] => c517c5fc5f0515070061b861cdc7f7fd
[rawReads] => 1215398342
[FastqRCS] => 1
[enaExperiment] => ERX13611298
[enaRun] => ERR14209078
)
)
[analysis] => Array
(
[0] => stdClass Object
(
[wgsAnalysisID] => 1739
[wgsID] => 510
[refGenome] => cf4
[dateSubmitted] => 2025-01-06 11:13:17
[dateCompleted] => 2025-01-07 17:23:36
[bamMd5] => 2adb27f2300e4ad955130e372ca3e001
[rdsBam] => 1
[rcsBam] => 1
[totalReads] => 775390195
[primaryReads] => 766501340
[mappedReads] => 774076752
[primaryMapped] => 765187897
[pairedReads] => 751640968
[meanInsertSize] => 369.42
[meanReadDepth] => 31.36
[variantsCalled] => 6168095
[variantsFiltered] => 5886538
[snpCount] => 4157894
[snpHom] => 1889196
[snpHet] => 2268698
[indelCount] => 1737622
[insHom] => 339760
[delHom] => 464061
[insHet] => 437884
[delHet] => 530742
[genomicsDB] => cf4-gundog
[varsity] => 0
[enaAnalysis] => ERZ25759338
[enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759338/V_33216-cf4.bam
)
)
)
Sample Analyses
| Started | Researcher | Cases | Controls | Status |
| 20/05/2019 17:10 | eschofield | 2 | 54 | Running |
| 12/05/2019 11:01 | eschofield | 2 | 50 | Completed |
| 28/04/2019 12:33 | eschofield | 1 | 50 | Completed |
| 28/04/2019 10:26 | eschofield | 1 | 50 | Error |
| 28/04/2019 09:15 | eschofield | 1 | 50 | Error |
| 20/04/2019 16:54 | eschofield | 1 | 40 | Completed |
chr3:40808242