Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099816
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 827
                    [wgsID] => 510
                    [fwdFile] => V_33216_R1.fastq.gz
                    [fwdMd5] => e184be6db9a9e0d1b9589ca664aef630
                    [revFile] => V_33216_R2.fastq.gz
                    [revMd5] => c517c5fc5f0515070061b861cdc7f7fd
                    [rawReads] => 1215398342
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611298
                    [enaRun] => ERR14209078
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1739
                    [wgsID] => 510
                    [refGenome] => cf4
                    [dateSubmitted] => 2025-01-06 11:13:17
                    [dateCompleted] => 2025-01-07 17:23:36
                    [bamMd5] => 2adb27f2300e4ad955130e372ca3e001
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 775390195
                    [primaryReads] => 766501340
                    [mappedReads] => 774076752
                    [primaryMapped] => 765187897
                    [pairedReads] => 751640968
                    [meanInsertSize] => 369.42
                    [meanReadDepth] => 31.36
                    [variantsCalled] => 6168095
                    [variantsFiltered] => 5886538
                    [snpCount] => 4157894
                    [snpHom] => 1889196
                    [snpHet] => 2268698
                    [indelCount] => 1737622
                    [insHom] => 339760
                    [delHom] => 464061
                    [insHet] => 437884
                    [delHet] => 530742
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ25759338
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759338/V_33216-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242