Array
(
    [experiment] => Array
        (
            [0] => stdClass Object
                (
                    [BioSample] => SAMEA116099818
                    [wgsExptID] => 30
                    [Batch] => CRUKCI_7
                    [SeqLaboratory] => Cancer Research UK Cambridge Institute
                    [Platform] => Illumina
                    [InstrumentModel] => NovaSeq X
                    [ReadType] => 150bp:PAIRED:30X
                    [LibraryPrep] => CRUKCI, Illumina PCR-free DNA Prep
                    [PcrFree] => Y
                    [SampleCount] => 53
                    [DateSubmitted] => 2024-09-06
                    [FastqID] => 829
                    [wgsID] => 512
                    [fwdFile] => V_33492_R1.fastq.gz
                    [fwdMd5] => 97433e5e75fd81877543a5ee5b886155
                    [revFile] => V_33492_R2.fastq.gz
                    [revMd5] => 6cdc5c1b6ad33ce82b9efd44dd97054d
                    [rawReads] => 938672616
                    [FastqRCS] => 1
                    [enaExperiment] => ERX13611299
                    [enaRun] => ERR14209079
                )

        )

    [analysis] => Array
        (
            [0] => stdClass Object
                (
                    [wgsAnalysisID] => 1738
                    [wgsID] => 512
                    [refGenome] => cf4
                    [dateSubmitted] => 2025-01-06 11:13:40
                    [dateCompleted] => 2025-01-07 15:19:08
                    [bamMd5] => 2c4eadcf65b3a7cf73fbd90efa9dd667
                    [rdsBam] => 1
                    [rcsBam] => 1
                    [totalReads] => 755850528
                    [primaryReads] => 748940484
                    [mappedReads] => 755049754
                    [primaryMapped] => 748139710
                    [pairedReads] => 737946590
                    [meanInsertSize] => 358.46
                    [meanReadDepth] => 29.08
                    [variantsCalled] => 6294626
                    [variantsFiltered] => 6027196
                    [snpCount] => 4266571
                    [snpHom] => 1786843
                    [snpHet] => 2479728
                    [indelCount] => 1770113
                    [insHom] => 320958
                    [delHom] => 438132
                    [insHet] => 471168
                    [delHet] => 577367
                    [genomicsDB] => cf4-gundog
                    [varsity] => 0
                    [enaAnalysis] => ERZ25759325
                    [enaBam] => ftp.sra.ebi.ac.uk/vol1/analysis/ERZ257/ERZ25759325/V_33492-cf4.bam
                )

        )

)

Sample Analyses

StartedResearcherCasesControlsStatus
20/05/2019 17:10eschofield254Running
12/05/2019 11:01eschofield250Completed
28/04/2019 12:33eschofield150Completed
28/04/2019 10:26eschofield150Error
28/04/2019 09:15eschofield150Error
20/04/2019 16:54eschofield140Completed

Results

chr3:40808242